wmtk Namespace Reference

Namespaces
	attribute
	autogen
	components
	function
	image
	invariants
	io
	mesh_utils
	multimesh
	operations
	simplex
	tests
	utils

Classes
class	hash
class	hash< wmtk::attribute::AttributeHandle >
class	hash< wmtk::attribute::TypedAttributeHandle< T > >
class	hash< wmtk::attribute::MeshAttributeHandle >
class	Cell
class	EdgeMesh
class	EnergyFilterInvariant
class	MaxEdgeLengthInvariant
class	MultiMeshMapValidInvariant
class	MultiMeshEdgeTopologyInvariant
class	RoundedInvariant
class	SimplexInversionInvariant
class	Swap23EnergyBeforeInvariant
class	Swap2dEdgeLengthInvariant
class	Swap2dUnroundedVertexInvariant
class	Swap32EnergyBeforeInvariant
class	Swap32EnergyBeforeInvariantDouble
class	Swap44EnergyBeforeInvariant
class	Swap44EnergyBeforeInvariantDouble
class	Swap56EnergyBeforeInvariant
class	Swap56EnergyBeforeInvariantDouble
class	TodoInvariant
class	TodoLargerInvariant
class	TodoSmallerInvariant
class	HDF5Reader
class	HDF5Writer
class	MeshWriter
class	Mesh
class	MeshCRTP
	A Curiously Recurring Template Pattern shim to enable generic specialization of functions. More...
class	MultiMeshManager
class	PointMesh
class	Primitive
class	SchedulerStats
class	Scheduler
class	TetMesh
class	TriMesh
class	Tuple
class	Rational

Typedefs
using	AttributeHandle = attribute::AttributeHandle
template<typename T >
using	TypedAttributeHandle = attribute::TypedAttributeHandle< T >
using	InteriorEdgeInvariant = invariants::InteriorEdgeInvariant
using	InteriorVertexInvariant = invariants::InteriorVertexInvariant
using	Invariant = invariants::Invariant
using	MinEdgeLengthInvariant = invariants::MinEdgeLengthInvariant
using	MultiMeshLinkConditionInvariant = invariants::MultiMeshLinkConditionInvariant
using	MshReader = io::MshReader
using	ParaviewWriter = io::ParaviewWriter
template<typename T , int C>
using	RowVectors = Eigen::Matrix< T, Eigen::Dynamic, C >
template<typename T , int R>
using	SquareMatrix = Eigen::Matrix< T, R, R >
template<typename T >
using	MatrixX = Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic >
template<typename T , int R>
using	Vector = Eigen::Matrix< T, R, 1 >
template<typename T >
using	VectorX = Vector< T, Eigen::Dynamic >
template<typename T >
using	Vector2 = Vector< T, 2 >
template<typename T >
using	Vector3 = Vector< T, 3 >
template<typename T >
using	Vector4 = Vector< T, 4 >
template<typename T , int C>
using	RowVector = Eigen::Matrix< T, 1, C >
template<typename T >
using	RowVectorX = RowVector< T, Eigen::Dynamic >
using	VectorXl = VectorX< int64_t >
using	Vector2l = Vector< int64_t, 2 >
using	Vector3l = Vector< int64_t, 3 >
using	Vector4l = Vector< int64_t, 4 >
using	Vector5l = Vector< int64_t, 5 >
using	Vector3d = Vector< double, 3 >
using	Vector3r = Vector< Rational, 3 >
using	Vector2r = Vector< Rational, 2 >
using	RowVector2d = RowVector< double, 2 >
using	RowVector3d = RowVector< double, 3 >
using	RowVectors2l = RowVectors< int64_t, 2 >
using	RowVectors3l = RowVectors< int64_t, 3 >
using	RowVectors4l = RowVectors< int64_t, 4 >
using	RowVectors6l = RowVectors< int64_t, 6 >
using	RowVectors2d = RowVectors< double, 2 >
using	RowVectors3d = RowVectors< double, 3 >
using	RowVectors3r = RowVectors< Rational, 3 >
using	RowVectors2r = RowVectors< Rational, 2 >
using	MatrixXl = MatrixX< int64_t >

Enumerations
enum class	AttributeAccessMode { Immediate , Buffered }
enum class	PrimitiveType : int8_t { Vertex = 0 , Edge = 1 , Triangle = 2 , Tetrahedron = 3 }

Functions
template<typename InvariantType >
bool	find_invariant_in_collection_by_type (const InvariantCollection &invariants)
template<typename... InvariantTypes>
bool	find_invariants_in_collection_by_type (const InvariantCollection &invariants)
std::shared_ptr< Mesh >	read_mesh (const std::filesystem::path &filename, const bool ignore_z_if_zero, const std::vector< std::string > &tetrahedron_attributes)
int8_t	get_max_primitive_type_id (const std::vector< PrimitiveType > &primitive_types)
	Get the maximum id for a list of primitive types. More...
std::string_view	primitive_type_name (PrimitiveType t)
constexpr int8_t	get_primitive_type_id (PrimitiveType t)
	Get a unique integer id corresponding to each primitive type. More...
constexpr PrimitiveType	operator- (PrimitiveType pt, int8_t n)
constexpr PrimitiveType	operator+ (PrimitiveType pt, int8_t n)
constexpr bool	operator== (PrimitiveType a, PrimitiveType b)
constexpr bool	operator!= (PrimitiveType a, PrimitiveType b)
constexpr bool	operator< (PrimitiveType a, PrimitiveType b)
constexpr bool	operator> (PrimitiveType a, PrimitiveType b)
constexpr bool	operator<= (PrimitiveType a, PrimitiveType b)
constexpr bool	operator>= (PrimitiveType a, PrimitiveType b)
constexpr PrimitiveType	get_primitive_type_from_id (int8_t id)
	Get the primitive type corresponding to its unique integer id. More...
int64_t	first_available_color (std::vector< int64_t > &used_neighbor_coloring)
std::tuple< RowVectors2l, VectorXl >	edgemesh_topology_initialization (Eigen::Ref< const RowVectors2l > E)
size_t	getPeakRSS ()
	Returns the peak (maximum so far) resident set size (physical memory use) measured in bytes, or zero if the value cannot be determined on this OS. More...
size_t	getCurrentRSS ()
	Returns the current resident set size (physical memory use) measured in bytes, or zero if the value cannot be determined on this OS. More...
bool	has_user_overloaded_logger_level ()
spdlog::logger &	logger ()
	Retrieves the current logger. More...
spdlog::logger &	opt_logger ()
	Retrieves the logger for the optimization. More...
void	set_logger (std::shared_ptr< spdlog::logger > logger)
	Setup a logger object to be used by WildmeshToolkit. More...
void	set_opt_logger (std::shared_ptr< spdlog::logger > logger)
	Setup a logger object to be used by WildmeshToolkit optimization. More...
void	log_and_throw_error (const std::string &msg)
template<typename... Args>
void	log_and_throw_error (const std::string &msg, const Args &... args)
std::tuple< MatrixXl, VectorXl >	make_free_sv_mesh (Eigen::Ref< const MatrixXl > S)
std::tuple< MatrixXl, Eigen::MatrixXd >	make_free_sv_mesh_with_positions (Eigen::Ref< const MatrixXl > S, Eigen::Ref< const Eigen::MatrixXd > V)
Rational	operator+ (const Rational &x, const Rational &y)
Rational	operator- (const Rational &x, const Rational &y)
Rational	operator- (const Rational &x)
Rational	pow (const Rational &x, int p)
Rational	operator* (const Rational &x, const Rational &y)
Rational	operator/ (const Rational &x, const Rational &y)
int	cmp (const Rational &r, const Rational &r1)
bool	operator== (const Rational &r, const Rational &r1)
bool	operator!= (const Rational &r, const Rational &r1)
Rational	abs (const Rational &r0)
std::ostream &	operator<< (std::ostream &os, const Rational &r)
std::tuple< RowVectors6l, RowVectors4l, RowVectors4l, VectorXl, VectorXl, VectorXl >	tetmesh_topology_initialization (Eigen::Ref< const RowVectors4l > T)
	Given the mesh connectivity in matrix format, finds unique edges and faces and their relations. More...
std::tuple< RowVectors3l, RowVectors3l, VectorXl, VectorXl >	trimesh_topology_initialization (Eigen::Ref< const RowVectors3l > F)

Variables
constexpr PrimitiveType	PV = PrimitiveType::Vertex
constexpr PrimitiveType	PE = PrimitiveType::Edge

Typedef Documentation

AttributeHandle

using wmtk::AttributeHandle = typedef attribute::AttributeHandle

Definition at line 55 of file AttributeHandle.hpp.

InteriorEdgeInvariant

using wmtk::InteriorEdgeInvariant = typedef invariants::InteriorEdgeInvariant

Definition at line 13 of file InteriorEdgeInvariant.hpp.

InteriorVertexInvariant

using wmtk::InteriorVertexInvariant = typedef invariants::InteriorVertexInvariant

Definition at line 13 of file InteriorVertexInvariant.hpp.

Invariant

using wmtk::Invariant = typedef invariants::Invariant

Definition at line 54 of file Invariant.hpp.

MatrixX

template<typename T >

using wmtk::MatrixX = typedef Eigen::Matrix<T, Eigen::Dynamic, Eigen::Dynamic>

Definition at line 14 of file Types.hpp.

MatrixXl

using wmtk::MatrixXl = typedef MatrixX<int64_t>

Definition at line 56 of file Types.hpp.

MinEdgeLengthInvariant

using wmtk::MinEdgeLengthInvariant = typedef invariants::MinEdgeLengthInvariant

Definition at line 26 of file MinEdgeLengthInvariant.hpp.

MshReader

using wmtk::MshReader = typedef io::MshReader

Definition at line 99 of file MshReader.hpp.

MultiMeshLinkConditionInvariant

using wmtk::MultiMeshLinkConditionInvariant = typedef invariants::MultiMeshLinkConditionInvariant

Definition at line 14 of file MultiMeshLinkConditionInvariant.hpp.

ParaviewWriter

using wmtk::ParaviewWriter = typedef io::ParaviewWriter

Definition at line 114 of file ParaviewWriter.hpp.

RowVector

template<typename T , int C>

using wmtk::RowVector = typedef Eigen::Matrix<T, 1, C>

Definition at line 29 of file Types.hpp.

RowVector2d

using wmtk::RowVector2d = typedef RowVector<double, 2>

Definition at line 44 of file Types.hpp.

RowVector3d

using wmtk::RowVector3d = typedef RowVector<double, 3>

Definition at line 45 of file Types.hpp.

RowVectors

template<typename T , int C>

using wmtk::RowVectors = typedef Eigen::Matrix<T, Eigen::Dynamic, C>

Definition at line 8 of file Types.hpp.

RowVectors2d

using wmtk::RowVectors2d = typedef RowVectors<double, 2>

Definition at line 50 of file Types.hpp.

RowVectors2l

using wmtk::RowVectors2l = typedef RowVectors<int64_t, 2>

Definition at line 46 of file Types.hpp.

RowVectors2r

using wmtk::RowVectors2r = typedef RowVectors<Rational, 2>

Definition at line 54 of file Types.hpp.

RowVectors3d

using wmtk::RowVectors3d = typedef RowVectors<double, 3>

Definition at line 51 of file Types.hpp.

RowVectors3l

using wmtk::RowVectors3l = typedef RowVectors<int64_t, 3>

Definition at line 47 of file Types.hpp.

RowVectors3r

using wmtk::RowVectors3r = typedef RowVectors<Rational, 3>

Definition at line 53 of file Types.hpp.

RowVectors4l

using wmtk::RowVectors4l = typedef RowVectors<int64_t, 4>

Definition at line 48 of file Types.hpp.

RowVectors6l

using wmtk::RowVectors6l = typedef RowVectors<int64_t, 6>

Definition at line 49 of file Types.hpp.

RowVectorX

template<typename T >

using wmtk::RowVectorX = typedef RowVector<T, Eigen::Dynamic>

Definition at line 31 of file Types.hpp.

SquareMatrix

template<typename T , int R>

using wmtk::SquareMatrix = typedef Eigen::Matrix<T, R, R>

Definition at line 11 of file Types.hpp.

TypedAttributeHandle

template<typename T >

using wmtk::TypedAttributeHandle = typedef attribute::TypedAttributeHandle<T>

Definition at line 76 of file TypedAttributeHandle.hpp.

Vector

template<typename T , int R>

using wmtk::Vector = typedef Eigen::Matrix<T, R, 1>

Definition at line 17 of file Types.hpp.

Vector2

template<typename T >

using wmtk::Vector2 = typedef Vector<T, 2>

Definition at line 22 of file Types.hpp.

Vector2l

using wmtk::Vector2l = typedef Vector<int64_t, 2>

Definition at line 34 of file Types.hpp.

Vector2r

using wmtk::Vector2r = typedef Vector<Rational, 2>

Definition at line 42 of file Types.hpp.

Vector3

template<typename T >

using wmtk::Vector3 = typedef Vector<T, 3>

Definition at line 24 of file Types.hpp.

Vector3d

using wmtk::Vector3d = typedef Vector<double, 3>

Definition at line 39 of file Types.hpp.

Vector3l

using wmtk::Vector3l = typedef Vector<int64_t, 3>

Definition at line 35 of file Types.hpp.

Vector3r

using wmtk::Vector3r = typedef Vector<Rational, 3>

Definition at line 41 of file Types.hpp.

Vector4

template<typename T >

using wmtk::Vector4 = typedef Vector<T, 4>

Definition at line 26 of file Types.hpp.

Vector4l

using wmtk::Vector4l = typedef Vector<int64_t, 4>

Definition at line 36 of file Types.hpp.

Vector5l

using wmtk::Vector5l = typedef Vector<int64_t, 5>

Definition at line 37 of file Types.hpp.

VectorX

template<typename T >

using wmtk::VectorX = typedef Vector<T, Eigen::Dynamic>

Definition at line 19 of file Types.hpp.

VectorXl

using wmtk::VectorXl = typedef VectorX<int64_t>

Definition at line 33 of file Types.hpp.

Enumeration Type Documentation

AttributeAccessMode

enum wmtk::AttributeAccessMode

strong

Enumerator
Immediate
Buffered

Definition at line 4 of file AttributeAccessMode.hpp.

PrimitiveType

enum wmtk::PrimitiveType : int8_t

strong

Enumerator
Vertex
Edge
Triangle
Tetrahedron

Definition at line 9 of file PrimitiveType.hpp.

Function Documentation

abs()

Rational wmtk::abs

(

const Rational &

r0

)

Definition at line 328 of file Rational.cpp.

Referenced by wmtk::function::utils::amips(), wmtk::components::multimesh::axis_aligned_fusion(), wmtk::invariants::ValenceImprovementInvariant::before(), wmtk::operations::AMIPSOptimizationSmoothingPeriodic::execute(), wmtk::function::EdgeValenceEnergy::get_value(), wmtk::components::internal::is_point_inside_triangle(), wmtk::components::adaptive_tessellation::image::make_samples_to_bicubic_coeffs_operator(), wmtk::function::Tri_AMIPS_energy_aux(), and wmtk::utils::triangle_unsigned_2d_area().

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cmp()

int wmtk::cmp	(	const Rational &	r,
		const Rational &	r1
	)

Definition at line 259 of file Rational.cpp.

Referenced by wmtk::components::multimesh::axis_aligned_fusion().

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edgemesh_topology_initialization()

std::tuple< RowVectors2l, VectorXl > wmtk::edgemesh_topology_initialization

(

Eigen::Ref< const RowVectors2l >

E

)

Definition at line 8 of file edgemesh_topology_initialization.cpp.

Referenced by wmtk::EdgeMesh::initialize().

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find_invariant_in_collection_by_type()

template<typename InvariantType >

bool wmtk::find_invariant_in_collection_by_type

(

const InvariantCollection &

invariants

)

Definition at line 6 of file find_invariant_in_collection_by_type.hpp.

find_invariants_in_collection_by_type()

template<typename... InvariantTypes>

bool wmtk::find_invariants_in_collection_by_type

(

const InvariantCollection &

invariants

)

Definition at line 22 of file find_invariant_in_collection_by_type.hpp.

first_available_color()

int64_t wmtk::first_available_color

(

std::vector< int64_t > &

used_neighbor_coloring

)

Definition at line 225 of file Scheduler.cpp.

Referenced by wmtk::Scheduler::run_operation_on_all_coloring().

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get_max_primitive_type_id()

int8_t wmtk::get_max_primitive_type_id

(

const std::vector< PrimitiveType > &

primitive_types

)

Get the maximum id for a list of primitive types.

Parameters

primitive_types

list of primitive types

Returns

maximum primitive type id among the list

Definition at line 17 of file PrimitiveType.cpp.

References get_primitive_type_id().

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get_primitive_type_from_id()

constexpr PrimitiveType wmtk::get_primitive_type_from_id ( int8_t  id )

inlineconstexpr

Get the primitive type corresponding to its unique integer id.

Definition at line 59 of file PrimitiveType.hpp.

Referenced by wmtk::simplex::boundary(), wmtk::simplex::internal::boundary_with_preserved_face_simplices(), wmtk::components::internal::MultiMeshFromTag::build_adjacency_matrix(), wmtk::attribute::AttributeManager::clear_attributes(), wmtk::Mesh::consolidate(), wmtk::io::MshReader::generate(), wmtk::attribute::AttributeManager::get_all_attributes(), wmtk::components::multimesh::utils::get_attribute(), wmtk::components::internal::MultiMeshFromTag::get_connected_region(), wmtk::simplex::LinkIterable::Iterator::init(), wmtk::Mesh::Mesh(), wmtk::components::multimesh::multimesh(), wmtk::simplex::ClosedStarIterable::Iterator::navigate_to_link(), wmtk::simplex::LinkIterable::Iterator::navigate_to_link(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::navigate_to_link(), wmtk::simplex::ClosedStarIterable::Iterator::operator*(), wmtk::simplex::HalfClosedStarIterable::Iterator::operator*(), wmtk::simplex::LinkIterable::Iterator::operator*(), wmtk::simplex::OpenStarIterable::Iterator::operator*(), wmtk::utils::primitive_range(), wmtk::simplex::TopDimensionCofacesIterable::Iterator::pt(), wmtk::components::internal::RegularSpace::regularize_tags(), wmtk::simplex::ClosedStarIterable::Iterator::step_depth_3(), wmtk::simplex::LinkIterable::Iterator::step_depth_3(), and wmtk::simplex::OpenStarIterable::Iterator::step_depth_3().

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get_primitive_type_id()

constexpr int8_t wmtk::get_primitive_type_id ( PrimitiveType  t )

inlineconstexpr

Get a unique integer id corresponding to each primitive type.

Ordering of primitive types by dimension allows to exploit the fact that all m<n dimensional primitives exist in an n dimensional manifold

Definition at line 18 of file PrimitiveType.hpp.

Referenced by wmtk::simplex::boundary(), wmtk::simplex::internal::boundary_with_preserved_face_simplices(), wmtk::components::internal::MultiMeshFromTag::build_adjacency_matrix(), wmtk::Mesh::capacity(), wmtk::attribute::AttributeManager::clear_attributes(), wmtk::TriMesh::TriMeshOperationExecutor::collapse_edge_precompute(), wmtk::components::internal::MultiMeshFromTag::compute_substructure_mesh(), wmtk::components::internal::MultiMeshFromTag::create_substructure_soup(), wmtk::simplex::ClosedStarIterable::Iterator::depth(), wmtk::simplex::CofacesSingleDimensionIterable::Iterator::depth(), wmtk::simplex::LinkIterable::Iterator::depth(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::depth(), wmtk::simplex::OpenStarIterable::Iterator::depth(), wmtk::simplex::TopDimensionCofacesIterable::Iterator::depth(), wmtk::simplex::IdSimplex::dimension(), wmtk::simplex::Simplex::dimension(), wmtk::operations::composite::TetEdgeSwap::execute(), wmtk::io::MshReader::extract_element_attribute(), wmtk::attribute::AttributeManager::get(), wmtk::TetMesh::TetMeshOperationExecutor::get_collapse_simplices_to_delete(), wmtk::TriMesh::TriMeshOperationExecutor::get_collapse_simplices_to_delete(), wmtk::components::internal::MultiMeshFromTag::get_connected_region(), wmtk::Mesh::get_const_flag_accessor(), wmtk::Mesh::get_flag_accessor(), get_max_primitive_type_id(), wmtk::autogen::SimplexDart::get_singleton(), wmtk::TetMesh::TetMeshOperationExecutor::get_split_simplices_to_delete(), wmtk::TriMesh::TriMeshOperationExecutor::get_split_simplices_to_delete(), wmtk::Mesh::guarantee_at_least_attributes(), wmtk::Mesh::guarantee_more_attributes(), wmtk::autogen::edge_mesh::SimplexDart::identity(), wmtk::autogen::tet_mesh::SimplexDart::identity(), wmtk::autogen::tri_mesh::SimplexDart::identity(), wmtk::operations::edge_mesh::SplitNewAttributeTopoInfo::input_ear_simplices(), wmtk::operations::tet_mesh::SplitNewAttributeTopoInfo::input_ear_simplices(), wmtk::operations::tri_mesh::SplitNewAttributeTopoInfo::input_ear_simplices(), wmtk::operations::edge_mesh::SplitNewAttributeTopoInfo::input_split_simplices(), wmtk::operations::tet_mesh::SplitNewAttributeTopoInfo::input_split_simplices(), wmtk::operations::tri_mesh::SplitNewAttributeTopoInfo::input_split_simplices(), wmtk::simplex::CofacesSingleDimensionIterable::Iterator::is_coface_d0(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::is_link_d1(), wmtk::simplex::ClosedStarIterable::Iterator::Iterator(), wmtk::simplex::LinkIterable::Iterator::Iterator(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::Iterator(), wmtk::autogen::utils::largest_shared_subdart_size(), wmtk::operations::internal::left_ear_action(), wmtk::operations::edge_mesh::CollapseNewAttributeTopoInfo::merged_simplices(), wmtk::operations::tet_mesh::CollapseNewAttributeTopoInfo::merged_simplices(), wmtk::operations::tri_mesh::CollapseNewAttributeTopoInfo::merged_simplices(), wmtk::simplex::ClosedStarIterable::Iterator::navigate_to_link(), wmtk::simplex::LinkIterable::Iterator::navigate_to_link(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::navigate_to_link(), wmtk::operations::edge_mesh::CollapseNewAttributeTopoInfo::new_simplices(), wmtk::operations::tet_mesh::CollapseNewAttributeTopoInfo::new_simplices(), wmtk::operations::tri_mesh::CollapseNewAttributeTopoInfo::new_simplices(), operator!=(), wmtk::simplex::ClosedStarIterable::Iterator::operator++(), wmtk::simplex::CofacesInSimplexIterable::Iterator::operator++(), wmtk::simplex::LinkIterable::Iterator::operator++(), wmtk::simplex::OpenStarIterable::Iterator::operator++(), operator<(), operator<=(), operator==(), operator>(), operator>=(), wmtk::autogen::edge_mesh::SimplexDart::opposite(), wmtk::autogen::tet_mesh::SimplexDart::opposite(), wmtk::autogen::tri_mesh::SimplexDart::opposite(), wmtk::operations::edge_mesh::SplitNewAttributeTopoInfo::output_duplicated_free_simplices(), wmtk::operations::tri_mesh::SplitNewAttributeTopoInfo::output_duplicated_free_simplices(), wmtk::operations::edge_mesh::SplitNewAttributeTopoInfo::output_rib_simplices(), wmtk::operations::tet_mesh::SplitNewAttributeTopoInfo::output_rib_simplices(), wmtk::operations::tri_mesh::SplitNewAttributeTopoInfo::output_rib_simplices(), wmtk::operations::edge_mesh::SplitNewAttributeTopoInfo::output_split_simplices(), wmtk::operations::tet_mesh::SplitNewAttributeTopoInfo::output_split_simplices(), wmtk::operations::tri_mesh::SplitNewAttributeTopoInfo::output_split_simplices(), wmtk::hash< wmtk::attribute::TypedAttributeHandle< T > >::primitive_hash(), wmtk::utils::primitive_range(), wmtk::autogen::edge_mesh::SimplexDart::primitive_to_index(), wmtk::autogen::tet_mesh::SimplexDart::primitive_to_index(), wmtk::autogen::tri_mesh::SimplexDart::primitive_to_index(), primitive_type_name(), wmtk::components::internal::RegularSpace::regularize_tags(), wmtk::Mesh::request_simplex_indices(), wmtk::Mesh::reserve_attributes(), wmtk::Mesh::reserve_more_attributes(), wmtk::operations::internal::right_ear_action(), wmtk::autogen::edge_mesh::SimplexDart::simplex_index(), wmtk::autogen::tet_mesh::SimplexDart::simplex_index(), wmtk::autogen::tri_mesh::SimplexDart::simplex_index(), wmtk::autogen::edge_mesh::simplex_index_from_valid_index(), wmtk::autogen::tet_mesh::simplex_index_from_valid_index(), wmtk::autogen::tri_mesh::simplex_index_from_valid_index(), wmtk::Mesh::simplices_to_gids(), wmtk::autogen::utils::subdart_maximal_action_to_face(), wmtk::autogen::utils::subdart_maximal_action_to_face_action(), wmtk::autogen::utils::subdart_maximal_action_to_face_size(), wmtk::autogen::edge_mesh::internal::switch_primitive_to_valid_tuple_index(), wmtk::autogen::tet_mesh::internal::switch_primitive_to_valid_tuple_index(), and wmtk::autogen::tri_mesh::internal::switch_primitive_to_valid_tuple_index().

getCurrentRSS()

size_t wmtk::getCurrentRSS

(

)

Returns the current resident set size (physical memory use) measured in bytes, or zero if the value cannot be determined on this OS.

Definition at line 87 of file getRSS.cpp.

getPeakRSS()

size_t wmtk::getPeakRSS

(

)

Returns the peak (maximum so far) resident set size (physical memory use) measured in bytes, or zero if the value cannot be determined on this OS.

Definition at line 44 of file getRSS.cpp.

has_user_overloaded_logger_level()

bool wmtk::has_user_overloaded_logger_level

(

)

Definition at line 9 of file Logger.cpp.

Referenced by wmtk::components::run_components().

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log_and_throw_error() [1/2]

void wmtk::log_and_throw_error

(

const std::string &

msg

)

Definition at line 101 of file Logger.cpp.

References logger().

Referenced by wmtk::simplex::closed_star(), wmtk::simplex::cofaces_single_dimension_tuples(), wmtk::components::internal::MultiMeshFromTag::compute_substructure_mesh(), wmtk::components::internal::MultiMeshFromTag::create_substructure_soup(), wmtk::components::export_cache(), wmtk::multimesh::utils::extract_and_register_child_mesh_from_tag(), wmtk::components::internal::from_json(), wmtk::components::gather_attributes(), wmtk::io::MshReader::generate(), wmtk::components::utils::get_attribute(), wmtk::components::multimesh::utils::get_attribute(), wmtk::io::utils::guess_file_type(), wmtk::components::import_cache(), wmtk::components::input::input(), wmtk::components::isotropic_remeshing::isotropic_remeshing(), wmtk::simplex::link(), wmtk::simplex::link_single_dimension(), log_and_throw_error(), wmtk::components::longest_edge_split::longest_edge_split(), wmtk::simplex::open_star(), wmtk::components::Marching::process(), wmtk::attribute::MeshAttributes< T >::register_attribute(), wmtk::components::internal::RegularSpace::regularize_tags(), wmtk::components::run_components(), wmtk::HDF5Reader::set_attribute(), wmtk::components::shortest_edge_collapse::shortest_edge_collapse(), wmtk::operations::SplitNewAttributeStrategy< T >::SplitNewAttributeStrategy(), wmtk::operations::SplitNewAttributeStrategy< T >::standard_split_rib_strategy(), wmtk::operations::SplitNewAttributeStrategy< T >::standard_split_strategy(), wmtk::components::tag_intersection(), wmtk::simplex::top_dimension_cofaces_tuples(), and wmtk::io::MshReader::validate().

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log_and_throw_error() [2/2]

template<typename... Args>

void wmtk::log_and_throw_error	(	const std::string &	msg,
		const Args &...	args
	)

Definition at line 44 of file Logger.hpp.

References log_and_throw_error().

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logger()

spdlog::logger & wmtk::logger

(

)

Retrieves the current logger.

Returns

A const reference to WildmeshToolkit's logger object.

Definition at line 58 of file Logger.cpp.

References set_logger().

Referenced by wmtk::components::internal::adjust_sizing_field(), wmtk::components::adjust_sizing_field(), wmtk::SimplexInversionInvariant< T >::after(), wmtk::invariants::EnvelopeInvariant::after(), wmtk::operations::EdgeCollapse::attribute_new_all_configured(), wmtk::operations::EdgeSplit::attribute_new_all_configured(), wmtk::components::multimesh::axis_aligned_fusion(), wmtk::components::CDT(), wmtk::components::internal::CDT_internal(), wmtk::multimesh::utils::MapValidator::check_child_map_attributes_valid(), wmtk::multimesh::MultiMeshManager::check_child_map_valid(), wmtk::multimesh::utils::MapValidator::check_child_switch_homomorphism(), wmtk::multimesh::utils::MapValidator::check_parent_map_attribute_valid(), wmtk::components::adaptive_tessellation::image::combine_position_normal_texture(), wmtk::TriMesh::TriMeshOperationExecutor::create_spine_simplices(), wmtk::components::internal::delaunay_geogram(), wmtk::TriMesh::TriMeshOperationExecutor::delete_simplices(), wmtk::components::edge_insertion(), wmtk::invariants::EnvelopeInvariant::EnvelopeInvariant(), wmtk::io::Cache::equals(), nlohmann::adl_serializer< wmtk::components::input::InputOptions >::from_json(), wmtk::utils::generate_raw_tetmesh_from_input_surface(), wmtk::io::CachedMultiMesh::get(), wmtk::components::get_all_meshes(), wmtk::components::multimesh::MeshCollection::get_named_multimesh(), wmtk::components::internal::get_vf(), wmtk::TetMesh::is_connectivity_valid(), wmtk::TriMesh::is_connectivity_valid(), wmtk::EdgeMesh::is_connectivity_valid(), wmtk::EdgeMesh::is_valid(), wmtk::TetMesh::is_valid(), wmtk::TriMesh::is_valid(), wmtk::components::isotropic_remeshing::isotropic_remeshing(), wmtk::simplex::LinkIterable::Iterator::Iterator(), wmtk::simplex::LinkSingleDimensionIterable::Iterator::Iterator(), wmtk::components::adaptive_tessellation::image::Image::load(), load_image_exr_red_channel(), load_image_exr_split_3channels(), wmtk::components::adaptive_tessellation::image::load_rgb_image(), log_and_throw_error(), wmtk::utils::StopWatch::log_msg(), wmtk::components::longest_edge_split::longest_edge_split(), wmtk::components::adaptive_tessellation::image::make_samples_to_bicubic_coeffs_operator(), wmtk::components::mesh_info(), wmtk::operations::utils::UpdateEdgeOperationMultiMeshMapFunctor::operator()(), wmtk::operations::utils::MultiMeshEdgeSplitFunctor::operator()(), wmtk::components::output::output(), wmtk::components::periodic_optimization(), wmtk::components::internal::periodic_optimization(), wmtk::SchedulerStats::print_update_log(), wmtk::components::Marching::process(), wmtk::HDF5Reader::read_mesh(), wmtk::components::remove_duplicates(), wmtk::TriMesh::TriMeshOperationExecutor::replace_incident_face(), wmtk::Mesh::request_simplex_indices(), wmtk::components::run_components(), wmtk::Scheduler::run_operation_on_all(), wmtk::Scheduler::run_operation_on_all_coloring(), wmtk::components::adaptive_tessellation::image::Image::save(), wmtk::components::adaptive_tessellation::image::save_image_exr_3channels(), wmtk::components::adaptive_tessellation::image::save_image_exr_red_channel(), wmtk::operations::EdgeCollapse::set_new_attribute_strategy(), wmtk::components::shortest_edge_collapse::shortest_edge_collapse(), wmtk::components::simplify(), wmtk::components::adaptive_tessellation::image::split_and_save_3channels(), wmtk::TetMesh::TetMeshOperationExecutor::split_edge(), wmtk::components::swapping(), wmtk::utils::DynamicArray< T, ArraySize >::switch_to_vector(), TEST_CASE(), wmtk::components::to_points(), wmtk::components::triangle_insertion::triangle_insertion(), wmtk::multimesh::MultiMeshManager::update_maps_from_edge_operation(), wmtk::io::MshReader::validate(), wmtk::components::wildmeshing(), wmtk::components::internal::wildmeshing2d(), wmtk::components::internal::wildmeshing3d(), wmtk::components::winding_number(), wmtk::components::output::WMTK_NLOHMANN_JSON_FRIEND_FROM_JSON_PROTOTYPE(), and wmtk::io::Cache::~Cache().

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make_free_sv_mesh()

std::tuple< MatrixXl, VectorXl > wmtk::make_free_sv_mesh

(

Eigen::Ref< const MatrixXl >

S

)

Definition at line 7 of file make_free_sv_mesh.cpp.

Referenced by make_free_sv_mesh_with_positions().

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make_free_sv_mesh_with_positions()

std::tuple< MatrixXl, Eigen::MatrixXd > wmtk::make_free_sv_mesh_with_positions	(	Eigen::Ref< const MatrixXl >	S,
		Eigen::Ref< const Eigen::MatrixXd >	V
	)

Definition at line 24 of file make_free_sv_mesh.cpp.

References make_free_sv_mesh().

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operator!=() [1/2]

bool wmtk::operator!=	(	const Rational &	r,
		const Rational &	r1
	)

Definition at line 311 of file Rational.cpp.

operator!=() [2/2]

constexpr bool wmtk::operator!= ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 34 of file PrimitiveType.hpp.

References get_primitive_type_id().

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operator*()

Rational wmtk::operator*	(	const Rational &	x,
		const Rational &	y
	)

Definition at line 178 of file Rational.cpp.

operator+() [1/2]

Rational wmtk::operator+	(	const Rational &	x,
		const Rational &	y
	)

Definition at line 104 of file Rational.cpp.

operator+() [2/2]

constexpr PrimitiveType wmtk::operator+ ( PrimitiveType  pt, int8_t  n  )

inlineconstexpr

Definition at line 26 of file PrimitiveType.hpp.

operator-() [1/3]

Rational wmtk::operator-

(

const Rational &

x

)

Definition at line 157 of file Rational.cpp.

operator-() [2/3]

Rational wmtk::operator-	(	const Rational &	x,
		const Rational &	y
	)

Definition at line 130 of file Rational.cpp.

operator-() [3/3]

constexpr PrimitiveType wmtk::operator- ( PrimitiveType  pt, int8_t  n  )

inlineconstexpr

Definition at line 23 of file PrimitiveType.hpp.

operator/()

Rational wmtk::operator/	(	const Rational &	x,
		const Rational &	y
	)

Definition at line 204 of file Rational.cpp.

operator<()

constexpr bool wmtk::operator< ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 38 of file PrimitiveType.hpp.

References get_primitive_type_id().

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operator<<()

std::ostream& wmtk::operator<<	(	std::ostream &	os,
		const Rational &	r
	)

Definition at line 340 of file Rational.cpp.

operator<=()

constexpr bool wmtk::operator<= ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 46 of file PrimitiveType.hpp.

References get_primitive_type_id().

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operator==() [1/2]

bool wmtk::operator==	(	const Rational &	r,
		const Rational &	r1
	)

Definition at line 286 of file Rational.cpp.

operator==() [2/2]

constexpr bool wmtk::operator== ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 30 of file PrimitiveType.hpp.

References get_primitive_type_id().

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operator>()

constexpr bool wmtk::operator> ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 42 of file PrimitiveType.hpp.

References get_primitive_type_id().

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operator>=()

constexpr bool wmtk::operator>= ( PrimitiveType  a, PrimitiveType  b  )

inlineconstexpr

Definition at line 50 of file PrimitiveType.hpp.

References get_primitive_type_id().

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opt_logger()

spdlog::logger & wmtk::opt_logger

(

)

Retrieves the logger for the optimization.

Returns

A const reference to WildmeshToolkit's optimization logger object.

Definition at line 75 of file Logger.cpp.

Referenced by wmtk::operations::AMIPSOptimizationSmoothing::create_solver(), wmtk::operations::AMIPSOptimizationSmoothingPeriodic::create_solver(), wmtk::operations::OptimizationSmoothing::create_solver(), and wmtk::components::run_components().

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pow()

Rational wmtk::pow	(	const Rational &	x,
		int	p
	)

Definition at line 166 of file Rational.cpp.

Referenced by wmtk::operations::AMIPSOptimizationSmoothing::WMTKAMIPSProblem< S >::gradient(), wmtk::operations::AMIPSOptimizationSmoothingPeriodic::WMTKAMIPSProblem< S >::gradient(), wmtk::operations::AMIPSOptimizationSmoothing::WMTKAMIPSProblem< S >::hessian(), wmtk::operations::AMIPSOptimizationSmoothingPeriodic::WMTKAMIPSProblem< S >::hessian(), TEST_CASE(), wmtk::function::Tet_AMIPS_energy(), wmtk::function::utils::Tet_AMIPS_energy(), wmtk::function::Tet_AMIPS_hessian(), wmtk::function::utils::Tet_AMIPS_hessian(), wmtk::function::Tet_AMIPS_jacobian(), wmtk::function::utils::Tet_AMIPS_jacobian(), wmtk::components::to_points(), wmtk::function::Tri_AMIPS_hessian(), wmtk::operations::AMIPSOptimizationSmoothing::WMTKAMIPSProblem< S >::value(), and wmtk::operations::AMIPSOptimizationSmoothingPeriodic::WMTKAMIPSProblem< S >::value().

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primitive_type_name()

std::string_view wmtk::primitive_type_name

(

PrimitiveType

t

)

Definition at line 41 of file PrimitiveType.cpp.

References get_primitive_type_id().

Referenced by wmtk::multimesh::utils::MapValidator::check_child_switch_homomorphism(), wmtk::components::isotropic_remeshing::isotropic_remeshing(), wmtk::components::longest_edge_split::longest_edge_split(), wmtk::attribute::TypedAttributeHandle< T >::operator std::string(), wmtk::Mesh::request_simplex_indices(), and wmtk::components::shortest_edge_collapse::shortest_edge_collapse().

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read_mesh()

std::shared_ptr< Mesh > wmtk::read_mesh	(	const std::filesystem::path &	filename,
		const bool	ignore_z_if_zero,
		const std::vector< std::string > &	tetrahedron_attributes
	)

Definition at line 11 of file MeshReader.cpp.

References wmtk::io::read_mesh().

Referenced by wmtk::io::Cache::equals(), and wmtk::io::CachedMultiMesh::load().

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set_logger()

void wmtk::set_logger

(

std::shared_ptr< spdlog::logger >

logger

)

Setup a logger object to be used by WildmeshToolkit.

Calling this function with other WildmeshToolkit function is not thread-safe.

Parameters

[in]

logger

New logger object to be used by WildmeshToolkit. Ownership is shared with WildmeshToolkit.

Definition at line 90 of file Logger.cpp.

Referenced by logger().

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set_opt_logger()

void wmtk::set_opt_logger

(

std::shared_ptr< spdlog::logger >

logger

)

Setup a logger object to be used by WildmeshToolkit optimization.

Calling this function with other WildmeshToolkit function is not thread-safe.

Parameters

[in]

logger

New logger object to be used by WildmeshToolkit logger. Ownership is shared with WildmeshToolkit.

Definition at line 96 of file Logger.cpp.

tetmesh_topology_initialization()

std::tuple< RowVectors6l, RowVectors4l, RowVectors4l, VectorXl, VectorXl, VectorXl > wmtk::tetmesh_topology_initialization

(

Eigen::Ref< const RowVectors4l >

T

)

Given the mesh connectivity in matrix format, finds unique edges and faces and their relations.

Definition at line 11 of file tetmesh_topology_initialization.cpp.

References wmtk::autogen::tet_mesh::auto_3d_edges, and wmtk::autogen::tet_mesh::auto_3d_faces.

Referenced by wmtk::TetMesh::initialize().

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trimesh_topology_initialization()

std::tuple< RowVectors3l, RowVectors3l, VectorXl, VectorXl > wmtk::trimesh_topology_initialization

(

Eigen::Ref< const RowVectors3l >

F

)

Definition at line 10 of file trimesh_topology_initialization.cpp.

References wmtk::autogen::tri_mesh::auto_2d_edges.

Referenced by wmtk::TriMesh::initialize().

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Variable Documentation

PE

constexpr static PrimitiveType wmtk::PE = PrimitiveType::Edge

constexpr

Definition at line 25 of file EnvelopeInvariant.cpp.

Referenced by wmtk::invariants::CollapseEnergyBeforeInvariant::before(), wmtk::invariants::CollapseEnergyBeforeInvariantDouble::before(), wmtk::invariants::CollapseSoftEnergyBeforeInvariant::before(), wmtk::Swap23EnergyBeforeInvariant::before(), wmtk::Swap2dEdgeLengthInvariant::before(), wmtk::Swap2dUnroundedVertexInvariant::before(), wmtk::Swap32EnergyBeforeInvariant::before(), wmtk::Swap32EnergyBeforeInvariantDouble::before(), wmtk::Swap44EnergyBeforeInvariant::before(), wmtk::Swap44EnergyBeforeInvariantDouble::before(), wmtk::Swap56EnergyBeforeInvariant::before(), wmtk::Swap56EnergyBeforeInvariantDouble::before(), wmtk::simplex::boundary_tuples(), wmtk::simplex::internal::boundary_with_preserved_face_tuples(), wmtk::components::CDT(), wmtk::simplex::coface_preserving_boundary_tuples(), wmtk::simplex::edges(), wmtk::operations::composite::TetFaceSwap::execute(), wmtk::simplex::faces(), wmtk::function::PositionMapAMIPS2D::get_value_autodiff(), wmtk::simplex::link(), wmtk::simplex::link_single_dimension(), wmtk::operations::EdgeSplit::new_spine_edges(), wmtk::TriMesh::TriMeshOperationExecutor::next_edge(), wmtk::simplex::open_star(), wmtk::components::internal::periodic_optimization(), wmtk::TriMesh::TriMeshOperationExecutor::prev_edge(), wmtk::simplex::ClosedStarIterable::Iterator::step_faces_tetrahedron(), wmtk::simplex::ClosedStarIterable::Iterator::step_tet_mesh(), wmtk::simplex::HalfClosedStarIterable::Iterator::step_tet_mesh(), wmtk::simplex::ClosedStarIterable::Iterator::step_tri_mesh(), wmtk::simplex::HalfClosedStarIterable::Iterator::step_tri_mesh(), wmtk::components::triangle_insertion::triangle_insertion(), wmtk::operations::utils::UpdateEdgeOperationMultiMeshMapFunctor::update_all_hashes(), wmtk::simplex::vertices(), wmtk::components::wildmeshing(), and wmtk::components::internal::wildmeshing3d().

PV

constexpr static PrimitiveType wmtk::PV = PrimitiveType::Vertex

constexpr

Definition at line 24 of file EnvelopeInvariant.cpp.

Referenced by wmtk::invariants::EnvelopeInvariant::after(), wmtk::invariants::CollapseEnergyBeforeInvariant::before(), wmtk::invariants::CollapseEnergyBeforeInvariantDouble::before(), wmtk::invariants::CollapseSoftEnergyBeforeInvariant::before(), wmtk::Swap23EnergyBeforeInvariant::before(), wmtk::Swap2dEdgeLengthInvariant::before(), wmtk::Swap2dUnroundedVertexInvariant::before(), wmtk::Swap32EnergyBeforeInvariant::before(), wmtk::Swap32EnergyBeforeInvariantDouble::before(), wmtk::Swap44EnergyBeforeInvariant::before(), wmtk::Swap44EnergyBeforeInvariantDouble::before(), wmtk::Swap56EnergyBeforeInvariant::before(), wmtk::Swap56EnergyBeforeInvariantDouble::before(), wmtk::simplex::boundary_tuples(), wmtk::simplex::internal::boundary_with_preserved_face_tuples(), wmtk::components::CDT(), wmtk::simplex::coface_preserving_boundary_tuples(), wmtk::simplex::edges(), wmtk::invariants::EnvelopeInvariant::EnvelopeInvariant(), wmtk::operations::composite::TetFaceSwap::execute(), wmtk::simplex::faces(), wmtk::function::PositionMapAMIPS2D::get_value_autodiff(), wmtk::simplex::link(), wmtk::simplex::link_single_dimension(), wmtk::TriMesh::TriMeshOperationExecutor::next_edge(), wmtk::simplex::open_star(), wmtk::components::internal::periodic_optimization(), wmtk::TriMesh::TriMeshOperationExecutor::prev_edge(), wmtk::simplex::ClosedStarIterable::Iterator::step_faces_tetrahedron(), wmtk::simplex::ClosedStarIterable::Iterator::step_tet_mesh(), wmtk::simplex::HalfClosedStarIterable::Iterator::step_tet_mesh(), wmtk::simplex::ClosedStarIterable::Iterator::step_tri_mesh(), wmtk::simplex::HalfClosedStarIterable::Iterator::step_tri_mesh(), wmtk::components::triangle_insertion::triangle_insertion(), wmtk::operations::utils::UpdateEdgeOperationMultiMeshMapFunctor::update_all_hashes(), wmtk::simplex::vertices(), wmtk::components::wildmeshing(), and wmtk::components::internal::wildmeshing3d().