read_image_msh.hpp

#pragma once
 
#include <wmtk/io/ComponentIO.hpp>
 
#include <nlohmann/json.hpp>
#include <string>
#include <wmtk/Types.hpp>
#include <wmtk/history/History.hpp>
 
namespace wmtk::components::simwild {
 
struct InputData
{
    MatrixXd V_input;
    MatrixXr V_input_r;
    MatrixXi T_input;
    MatrixSi T_input_tag;
    std::vector<std::string> tag_names;
 
    MatrixXi F_tagged;
    MatrixSi F_tags;
    std::vector<std::string> face_tag_names;
 
    MatrixXd V_envelope;
    MatrixXi F_envelope;
    std::vector<uint64_t> F_envelope_labels;
    std::string envelope_name;
 
    std::vector<int64_t> corr_input_vid;
 
    bool has_input_history = false;
    history::SurfaceHistory input_history;
    std::vector<std::pair<std::array<std::array<double, 3>, 3>, std::vector<uint32_t>>>
        facet_sources;
};
 
void tags_from_label_images(MeshData& mesh, const std::string& what);
InputData read_image_msh(const std::string& path);
InputData read_mesh_data(const MeshData& mesh, const MeshData* envelope = nullptr);
 
InputData read_mesh(
    const std::vector<std::string>& input_paths,
    const std::string& output_filename,
    const nlohmann::json& json_params,
    const io::ComponentIO* component_io = nullptr);
 
InputData read_curves(
    const std::vector<std::string>& input_paths,
    const std::string& output_filename,
    const nlohmann::json& json_params,
    const io::ComponentIO* component_io = nullptr);
 
int resolve_input_dimension(
    const std::vector<std::string>& input_paths,
    const nlohmann::json& json_params,
    const io::ComponentIO* component_io = nullptr);
 
} // namespace wmtk::components::simwild